# makefile for DOCK 3.5 accessories subdirectoryMAKE = makeFFLAGS = -O2 -NC200BIN = ../binPROGS = \	addprh \	cluster \	condense \	conect \	convsyb \	delphiscore \	db3todb35 \	fdat2pdb \	fixDOCKout \	get_near_res \	hbdata \	mol2sdf \	oldscore \	pdb2ms \	pdbrenum \	pdbtosph \	rebump \	reformatms \	reformH \	rmsd \	showbox \	showsphere \	sphgen \	splitmolSCRIPTS = \	autoMS \	charge \	decolorize \	formatINDOCK \	invertPDB \	mol2sph \	x2pdbOBJS = \	addprh.o \	conect.o \	convsyb.o \	delphiscore.o \	hbdata.o \	heapindex.o \	ms2dot.o \	oldscore.o \	pdb2ms.o \	pdbtosph.o \	reformatms.o \	showbox.o \	showsphere.o \	showbox.o \	sphgen.oOBJS_DAG = \	condense.o \	db3todb35.o \	fixDOCKout.o \	fdat2pdb.o \	get_near_res.o \	mol2sdf.o \	pdbrenum.o \	rebump.o \	reformH.o \	rmsd.o \	splitmol.oOBJS_CLUS = \	cluster.o \	clus.o \	avrsph.o \	rdclus.o \	fixclu.o \	getclu.o \	reords.o#############################################################################install: all	mv $(PROGS) $(BIN)	cp $(SCRIPTS) $(BIN)all: $(PROGS)clean:	rm -f $(OBJS) $(OBJS_CLUS) $(OBJS_DAG) readMOL2.o writeSDF.ouninstall:	cd $(BIN); rm $(PROGS)##############################################################################_____________________________________________________________________________# General dependencies$(OBJS_DAG) : aesthetics.h$(OBJS_CLUS): cluster.h#_____________________________________________________________________________# Subroutinesaesthetics.o: aesthetics.f aesthetics.hgetElement.o: getElement.f elements.hreadMOL2.o: readMOL2.fwriteMOL2.o: writeMOL2.freadSDF.o: readSDF.fwriteSDF.o: writeSDF.fparsefield.o: parsefield.f#_____________________________________________________________________________# Programsaddprh: addprh.o	f77 $(FFLAGS) addprh.o -o addprhcluster: $(OBJS_CLUS)	f77 $(FFLAGS) $(OBJS_CLUS) -o clustercondense: condense.o aesthetics.o	f77 $(FFLAGS) condense.o aesthetics.o -o condenseconect: conect.o	f77 $(FFLAGS) conect.o -o conectconvsyb: convsyb.o	f77 $(FFLAGS) convsyb.o -o convsybdb3todb35: db3todb35.o aesthetics.o	f77 $(FFLAGS) db3todb35.o aesthetics.o -o db3todb35delphiscore: delphiscore.o	f77 $(FFLAGS) delphiscore.o -o delphiscorefixDOCKout: fixDOCKout.o aesthetics.o 	f77 $(FFLAGS) fixDOCKout.o aesthetics.o -o fixDOCKoutfdat2pdb: fdat2pdb.o aesthetics.o 	f77 $(FFLAGS) fdat2pdb.o aesthetics.o -o fdat2pdbget_near_res: get_near_res.o aesthetics.o 	f77 $(FFLAGS) get_near_res.o aesthetics.o -o get_near_reshbdata: hbdata.o	f77 $(FFLAGS) hbdata.o -o hbdatamol2sdf: mol2sdf.o writeSDF.o readMOL2.o parsefield.o aesthetics.o 	f77 $(FFLAGS) mol2sdf.o aesthetics.o writeSDF.o readMOL2.o parsefield.o -o mol2sdfoldscore: oldscore.o	f77 $(FFLAGS) oldscore.o -o oldscorepdb2ms: pdb2ms.o	f77 $(FFLAGS) pdb2ms.o -o pdb2mspdbrenum: pdbrenum.o aesthetics.o	f77 $(FFLAGS) pdbrenum.o aesthetics.o -o pdbrenumpdbtosph: pdbtosph.o	f77 $(FFLAGS) pdbtosph.o -o pdbtosphrebump: rebump.o aesthetics.o 	f77 $(FFLAGS) rebump.o aesthetics.o -o rebumpreformatms: reformatms.o	f77 $(FFLAGS) reformatms.o -o reformatmsreformH: reformH.o aesthetics.o	f77 $(FFLAGS) reformH.o aesthetics.o -o reformHrmsd: rmsd.o aesthetics.o 	f77 $(FFLAGS) rmsd.o aesthetics.o -o rmsdshowbox: showbox.o	f77 $(FFLAGS)  showbox.o -o showboxshowsphere: showsphere.o	f77 $(FFLAGS)  showsphere.o -o showspheresphgen: sphgen.o	f77 $(FFLAGS) sphgen.o -o sphgensplitmol: splitmol.o aesthetics.o heapindex.o	f77 $(FFLAGS) splitmol.o aesthetics.o heapindex.o -o splitmol#_____________________________________________________________________________#_____________________________________________________________________________# special programs - these are NOT be included in the general make and# must be explicitly made, e.g. make ms2dot # The following program requires access to SYBYL routines - please make sure# TA_ROOT is updated appropriately.# If sybyl development libraries are not installed, you must install them# from your Tripos distribution media, e.g.# 		sh $TA_ROOT/install/InstallSybyl cdrom developmentTA_ROOT = /bert/sybyl61ms2dot: ms2dot.o	f77 $(FFLAGS) -o $(BIN)/ms2dot ms2dot.o \          $(TA_ROOT)/lib/libxinterface.a \          $(TA_ROOT)/lib/libsyb.a \          $(TA_ROOT)/lib/uims2.a \          $(TA_ROOT)/lib/libutl.a \          $(TA_ROOT)/lib/libsystemdep.a \          $(TA_ROOT)/lib/libdisplay.a