# Makefile for quikfold and quikfold-tback version 3.1# Michael Zuker # Rensselaer Polytechnic InstituteSHELL	= /bin/sh# Set optimization flags as high as possible. What you see below is# only a guide.# Must choose 1 definition for FFLAGS and CFLAGS or make up your own#FFLAGS	= -O3 -col120 -static -mips4 # SGI with mips4#FFLAGS	= -O3 -col120 -static -mips2 # SGI with mips2FFLAGS	= -O3 -fno-automatic -ffixed-line-length-none # gnu Fortran#FFLAGS	= -O3 -extend_source # Compaq Alpha 8400 (Tru64 Unix 4.0D)#FFLAGS	= -Bstatic -O3 -e # Sun/Solaris (no dynamic library links)#FFLAGS	= -O2 -e # Sun/Solaris# Define compiler as appropriateFTN	= g77 #FTN	= f77 #BINDIR	= /usr/local/bin#DATDIR	= /usr/local/share/mfoldBINDIR	= /home/apps/binDATDIR	= /home/apps/share/mfoldMAXN1	= 9000MAXN2	= 800####################################################################### Nothing below here need be edited when installing. #######################################################################BINEXE	= bin/quikfold bin/quik-tback bin/quikfold-fasterBINS	= $(BINEXE)all: $(BINEXE) 	strip $(BINEXE) ; chmod 755 $(BINS) clean:	rm -f $(BINEXE) src/maxn*.inc install: $(BINEXE)	cp $(BINEXE) $(BINDIR)	@echo "Executables copied to $(BINDIR)"	@echo "Everything is installed. You can do a 'make clean'"# quikfoldQUIK	= src/quik.f src/rna-quik.f src/misc-quik.f src/dc.f src/multid.fbin/quikfold: src/maxn1.inc src/maxn2.inc $(QUIK)	$(FTN) $(FFLAGS) -o bin/quikfold $(QUIK) # quik-tbackQUIKT	= src/quik-tback.f src/rna-quik.f src/misc-quik-tback.f src/dc.f bin/quik-tback: src/maxn1.inc $(QUIKT)	$(FTN) $(FFLAGS) -o bin/quik-tback $(QUIKT) # quikfold-fasterQUIKF	= src/quik-faster.f src/rna-quik.f src/misc-quik.f src/dc.f \	  src/multid.fbin/quikfold-faster: src/maxn1.inc src/maxn2.inc $(QUIKF)	$(FTN) $(FFLAGS) -o bin/quikfold-faster $(QUIKF) src/maxn1.inc:	echo "      parameter (maxn=$(MAXN1))" > src/maxn1.incsrc/maxn2.inc:	echo "      parameter (maxn=$(MAXN2))" > src/maxn2.inc