#if !defined(STRUCTURE_H)#define STRUCTURE_H#include "defines.h"struct datatable //this structure contains all the info read from thermodynamic							//data files{ int poppen [5],maxpen,eparam[11],dangle[6][6][6][3],inter[31],bulge[31],		hairpin[31],stack[6][6][6][6],tstkh[6][6][6][6],tstki[6][6][6][6],		tloop[maxtloop+1][2],numoftloops,iloop22[6][6][6][6][6][6][6][6],		iloop21[6][6][6][6][6][6][6],iloop11[6][6][6][6][6][6],      coax[6][6][6][6],tstackcoax[6][6][6][6],coaxstack[6][6][6][6],      tstack[6][6][6][6],tstkm[6][6][6][6],auend,gubonus,cint,cslope,c3,      efn2a,efn2b,efn2c,triloop[maxtloop+1][2],numoftriloops,init,gail;float prelog;datatable();};//////////////////////////////////////////////////////////////////////struct structure //this structure contains all the info for a structure{int numofbases,numofstructures;int pair[maxforce][2],npair;int *numseq,*hnumber;int **basepr;int ndbl, dbl[maxforce];int energy[maxstructures+1],inter[3];int nnopair,nopair[maxforce];int ngu,gu[maxgu];char ctlabel[maxstructures+1][ctheaderlength],*nucs;bool intermolecular,allocated,templated;bool **tem;//int **fce;//[maxbases+1][2*maxbases]structure();~structure();void allocate(int size = maxbases);void allocatetem();/*structure is set up to hold many possible structures of the same sequence	numofbases = number of bases in sequence	numofstructures = number of alternative structures of the sequence				that is held by structure	numseq[i] = a numeric that stands for the base in the ith position				of the sequence,			A = 1			C = 2			G = 3			U = 4	basepr[i][j] = base to which the jth base is paired in the ith structure	force[i] = any information about the way the ith pair is treated when				folding; eg: forced single, etc	energy[i] = 10 * the Gibb's free energy of the ith structure, this				is done so that integer math can be performed				and the nearest tenth of a kcal/mol can be				followed	ctlabel = a string of information for each of the structures	fce = an array that can keep track of how each i,j pair is being				forced   hnumber array stores the historical numbering of a sequence   nucs is a character array to store the sequence information --   	this will allow the program to keep T and U from getting confused*/};#endif