----------Folding Modes:(1) default mode:    start structure is open chain    stop structure is minimum free enegy structure    example: hairpin.log, traj     ../Kinfold --log hpin --num 10 <./hpin.in>& traj(2) multi-stop mode:    start structure is open chain    stop structure(s) are 2nd and following lines in hpin.in    example: hairpin.e.log, traj.e     ../Kinfold --stop --log hpin.e --num 10 <./hpin.in>& traj.e(3) refolding mode:    start structure is 2nd line in hpin.in    stop structure(s) are 3rd and following lines in hpin.in    example: hairpin.ae.log, traj.ae     ../Kinfold --start --stop --log hpin.ae --num 10 <./hpin.in>& traj.aeif you don't want to log the trajectories use option --silent(trajectory files can get petty huge)----------Output:(A) log files (on each line you find):    randon seed    stop-structure-label or O ( for didn't reach stop-structure(s) )    first passage time    stop-structure if stop-structure-label equals O(B) trajectory files (on each line you find):    structure    energy    time    number of neighbours of structure (only with --verbose)    code for the move                 (only with --verbose)     (i=base pair insert move,      d=base pair delete move,      s,S=base pair shift move,      I=base pair double insert move (only with --noLP)      D=base pair double delete move (only with --noLP)     )    code for type of structure        (only with --verbose)     (1=strict local minimum,      2=degenerate local minimum,      0=anything else     )    stop-structure-label or O ( for didn't reach stop-structure(s) )----------canonical example: hpin.nolp, traj.nolp ../Kinfold --verbose --noLP --num 10 --log hpin.nolp < ./hpin.in > traj.nolp