%Metabolic Networks Toolbox%June 2005%%The Metabolic Networks Toolbox contains functions to create,%modify, display, and simulate biochemical reaction networks. %The networks are represented by a data structure described in%'network_structure'.%%Run 'demo_small_network' to get a first impression.%%FUNCTIONS%%Build and query network structure:%----------------------------------%% network_construct                      network constructor% network_find_metabolites               find indices of metabolites% network_find_reactions                 find indices of reactions% network_check                          validate dimensions of network fields% network_choose                         choose subnetwork% network_print_formulae                 print reaction formulae%%Graphics functions:                     see 'netgraph'%-------------------%%Choice of parameters:%---------------------% simulate_sat_kinetics                  choose random parameters for saturated kinetics% simulate_epsilon                       choose random elasticities%%Simulations:%------------% network_velocities                     compute metabolic fluxes% network_integrate                      simulate network dynamics% network_steady_state                   compute the steady state%%Metabolic control analysis              see 'control theory'%--------------------------%%FURTHER HELP TOPICS% network_structure                      data structure for metabolic networks% netgraph                               data structure for network graphs% kinetics_structure                     the different ways to define reaction kinetics% control_theory                         functions for metabolic control theory