?? ranker.java
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optionString = Utils.getOption('N', options);
if (optionString.length() != 0) {
setNumToSelect(Integer.parseInt(optionString));
}
}
/**
* Gets the current settings of ReliefFAttributeEval.
*
* @return an array of strings suitable for passing to setOptions()
*/
public String[] getOptions () {
String[] options = new String[6];
int current = 0;
if (!(getStartSet().equals(""))) {
options[current++] = "-P";
options[current++] = ""+startSetToString();
}
options[current++] = "-T";
options[current++] = "" + getThreshold();
options[current++] = "-N";
options[current++] = ""+getNumToSelect();
while (current < options.length) {
options[current++] = "";
}
return options;
}
/**
* converts the array of starting attributes to a string. This is
* used by getOptions to return the actual attributes specified
* as the starting set. This is better than using m_startRanges.getRanges()
* as the same start set can be specified in different ways from the
* command line---eg 1,2,3 == 1-3. This is to ensure that stuff that
* is stored in a database is comparable.
* @return a comma seperated list of individual attribute numbers as a String
*/
private String startSetToString() {
StringBuffer FString = new StringBuffer();
boolean didPrint;
if (m_starting == null) {
return getStartSet();
}
for (int i = 0; i < m_starting.length; i++) {
didPrint = false;
if ((m_hasClass == false) ||
(m_hasClass == true && i != m_classIndex)) {
FString.append((m_starting[i] + 1));
didPrint = true;
}
if (i == (m_starting.length - 1)) {
FString.append("");
}
else {
if (didPrint) {
FString.append(",");
}
}
}
return FString.toString();
}
/**
* Kind of a dummy search algorithm. Calls a Attribute evaluator to
* evaluate each attribute not included in the startSet and then sorts
* them to produce a ranked list of attributes.
*
* @param ASEvaluator the attribute evaluator to guide the search
* @param data the training instances.
* @return an array (not necessarily ordered) of selected attribute indexes
* @exception Exception if the search can't be completed
*/
public int[] search (ASEvaluation ASEval, Instances data)
throws Exception
{
int i, j;
if (!(ASEval instanceof AttributeEvaluator)) {
throw new Exception(ASEval.getClass().getName()
+ " is not a"
+ "Attribute evaluator!");
}
if (ASEval instanceof AttributeTransformer) {
data = ((AttributeTransformer)ASEval).transformedHeader();
}
m_numAttribs = data.numAttributes();
if (ASEval instanceof UnsupervisedSubsetEvaluator) {
m_hasClass = false;
}
else {
m_hasClass = true;
m_classIndex = data.classIndex();
}
m_startRange.setUpper(m_numAttribs - 1);
if (!(getStartSet().equals(""))) {
m_starting = m_startRange.getSelection();
}
int sl=0;
if (m_starting != null) {
sl = m_starting.length;
}
if ((m_starting != null) && (m_hasClass == true)) {
// see if the supplied list contains the class index
boolean ok = false;
for (i = 0; i < sl; i++) {
if (m_starting[i] == m_classIndex) {
ok = true;
break;
}
}
if (ok == false) {
sl++;
}
}
else {
if (m_hasClass == true) {
sl++;
}
}
m_attributeList = new int[m_numAttribs - sl];
m_attributeMerit = new double[m_numAttribs - sl];
// add in those attributes not in the starting (omit list)
for (i = 0, j = 0; i < m_numAttribs; i++) {
if (!inStarting(i)) {
m_attributeList[j++] = i;
}
}
AttributeEvaluator ASEvaluator = (AttributeEvaluator)ASEval;
for (i = 0; i < m_attributeList.length; i++) {
m_attributeMerit[i] = ASEvaluator.evaluateAttribute(m_attributeList[i]);
}
double[][] tempRanked = rankedAttributes();
int[] rankedAttributes = new int[m_attributeList.length];
for (i = 0; i < m_attributeList.length; i++) {
rankedAttributes[i] = (int)tempRanked[i][0];
}
return rankedAttributes;
}
/**
* Sorts the evaluated attribute list
*
* @return an array of sorted (highest eval to lowest) attribute indexes
* @exception Exception of sorting can't be done.
*/
public double[][] rankedAttributes ()
throws Exception
{
int i, j;
if (m_attributeList == null || m_attributeMerit == null) {
throw new Exception("Search must be performed before a ranked "
+ "attribute list can be obtained");
}
int[] ranked = Utils.sort(m_attributeMerit);
// reverse the order of the ranked indexes
double[][] bestToWorst = new double[ranked.length][2];
for (i = ranked.length - 1, j = 0; i >= 0; i--) {
bestToWorst[j++][0] = ranked[i];
}
// convert the indexes to attribute indexes
for (i = 0; i < bestToWorst.length; i++) {
int temp = ((int)bestToWorst[i][0]);
bestToWorst[i][0] = m_attributeList[temp];
bestToWorst[i][1] = m_attributeMerit[temp];
}
if (m_numToSelect > bestToWorst.length) {
throw new Exception("More attributes requested than exist in the data");
}
if (m_numToSelect <= 0) {
if (m_threshold == -Double.MAX_VALUE) {
m_calculatedNumToSelect = bestToWorst.length;
} else {
determineNumToSelectFromThreshold(bestToWorst);
}
}
/* if (m_numToSelect > 0) {
determineThreshFromNumToSelect(bestToWorst);
} */
return bestToWorst;
}
private void determineNumToSelectFromThreshold(double [][] ranking) {
int count = 0;
for (int i = 0; i < ranking.length; i++) {
if (ranking[i][1] > m_threshold) {
count++;
}
}
m_calculatedNumToSelect = count;
}
private void determineThreshFromNumToSelect(double [][] ranking)
throws Exception {
if (m_numToSelect > ranking.length) {
throw new Exception("More attributes requested than exist in the data");
}
if (m_numToSelect == ranking.length) {
return;
}
m_threshold = (ranking[m_numToSelect-1][1] +
ranking[m_numToSelect][1]) / 2.0;
}
/**
* returns a description of the search as a String
* @return a description of the search
*/
public String toString () {
StringBuffer BfString = new StringBuffer();
BfString.append("\tAttribute ranking.\n");
if (m_starting != null) {
BfString.append("\tIgnored attributes: ");
BfString.append(startSetToString());
BfString.append("\n");
}
if (m_threshold != -Double.MAX_VALUE) {
BfString.append("\tThreshold for discarding attributes: "
+ Utils.doubleToString(m_threshold,8,4)+"\n");
}
return BfString.toString();
}
/**
* Resets stuff to default values
*/
protected void resetOptions () {
m_starting = null;
m_startRange = new Range();
m_attributeList = null;
m_attributeMerit = null;
m_threshold = -Double.MAX_VALUE;
}
private boolean inStarting (int feat) {
// omit the class from the evaluation
if ((m_hasClass == true) && (feat == m_classIndex)) {
return true;
}
if (m_starting == null) {
return false;
}
for (int i = 0; i < m_starting.length; i++) {
if (m_starting[i] == feat) {
return true;
}
}
return false;
}
}
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