# makefile for hidden Markov model code.# CC = gcc  # use gnu C++ compiler#CC = CC # use SunOS C++ compilerCFLAGS = -c -O	 # optimize# CFLAGS = -c -O # CFLAGS = -c -g # debug# CFLAGS = -c -pedantic -ansi # verify ANSI complianceall : train_hmm test_hmm generate_seqtrain_hmm : hmm.o train_hmm.o	$(CC) -o train_hmm hmm.o train_hmm.o -lm -lg++test_hmm : hmm.o test_hmm.o	$(CC) -o test_hmm hmm.o test_hmm.o -lm -lg++generate_seq : hmm.o generate_seq.o	$(CC) -o generate_seq generate_seq.o hmm.o -lm -lg++	train_hmm.o : train_hmm.cc hmm.h	$(CC) $(CFLAGS) train_hmm.cctest_hmm.o : test_hmm.cc hmm.h	$(CC) $(CFLAGS) test_hmm.ccgenerate_seq.o : generate_seq.cc hmm.h	$(CC) $(CFLAGS) generate_seq.cc hmm.o : hmm.cc hmm.h 	$(CC) $(CFLAGS) hmm.cc clean : 	rm -f *.o core *.seq *.seq.hmm *~