$(CC) $(CFLAGS) -c print_avsfld.cc writeMolAsPDBQ.o : writePDBQ.cc writePDBQ.h constants.h autocomm.h	$(CC) $(CFLAGS) -c -DWRITEMOLASPDBQFUNC writePDBQ.cc -o writeMolAsPDBQ.owritePDBQ.o : writePDBQ.cc writePDBQ.h constants.h autocomm.h	$(CC) $(CFLAGS) -c writePDBQ.cc -o writePDBQ.owritePDBQState.o : writePDBQ.cc writePDBQ.h constants.h autocomm.h	$(CC) $(CFLAGS) -c -DWRITEPDBQSTATE writePDBQ.cc -o writePDBQState.oprint_rem.o : print_rem.cc print_rem.h	$(CC) $(CFLAGS) -c print_rem.ccprintdate.o : printdate.cc printdate.h	$(CC) $(CFLAGS) -c printdate.ccprintEnergies.o : printEnergies.cc printEnergies.h	$(CC) $(CFLAGS) -c printEnergies.ccprinthms.o : printhms.cc printhms.h	$(CC) $(CFLAGS) -c printhms.ccqmultiply.o : qmultiply.cc qmultiply.h	$(CC) $(CFLAGS) -c qmultiply.ccqtransform.o : qtransform.cc qtransform.h constants.h	$(CC) $(CFLAGS) -c qtransform.ccquicksort.o : quicksort.cc quicksort.h	$(CC) $(CFLAGS) -c quicksort.ccranlib.o : ranlib.cc ranlib.h	$(CC) $(CFLAGS) -c ranlib.ccreadfield.o : readfield.cc readfield.h constants.h openfile.h stop.h	$(CC) $(CFLAGS) -c readfield.ccreadmap.o : readmap.cc readmap.h constants.h openfile.h warn_bad_file.h strindex.h print_2x.h check_header_line.h warn_bad_file.h check_header_float.h check_header_int.h timesys.h autocomm.h	$(CC) $(CFLAGS) -c readmap.ccrep.o: rep.cc rep.h ranlib.h	$(CC) $(CFLAGS) -c rep.ccscauchy.o  : scauchy.cc ranlib.h	$(CC) $(CFLAGS) -c scauchy.ccset_cmd_io_std.o : set_cmd_io_std.cc set_cmd_io_std.h	$(CC) $(CFLAGS) -c set_cmd_io_std.ccsetflags.o : setflags.cc setflags.h	$(CC) $(CFLAGS) -c setflags.ccsimanneal.o : simanneal.cc simanneal.h constants.h autocomm.h	$(CC) $(OLIMIT) -c simanneal.ccsort_enrg.o : sort_enrg.cc sort_enrg.h constants.h	$(CC) $(CFLAGS) -c sort_enrg.ccstop.o : stop.cc stop.h constants.h	$(CC) $(CFLAGS) -c stop.ccstrindex.o : strindex.cc strindex.h	$(CC) $(CFLAGS) -c strindex.ccsuccess.o : success.cc success.h constants.h autocomm.h	$(CC) $(CFLAGS) -c success.ccsummarizegrids.o : summarizegrids.cc summarizegrids.h constants.h autocomm.h	$(CC) $(CFLAGS) -c summarizegrids.ccsupport.o : support.cc support.h eval.h	$(CC) $(CFLAGS) -c support.ccswap.o : swap.cc swap.h	$(CC) $(CFLAGS) -c swap.cctimesys.o : timesys.cc timesys.h	$(CC) $(CFLAGS) -c timesys.cctimesyshms.o : timesyshms.cc timesyshms.h	$(CC) $(CFLAGS) -c timesyshms.cctorNorVec.o : torNorVec.cc torNorVec.h constants.h	$(CC) $(CFLAGS) -c torNorVec.cctorsion.o : torsion.cc torsion.h constants.h	$(CC) $(CFLAGS) -c torsion.cctrilinterp.o : trilinterp.cc trilinterp.h constants.h	$(CC) $(CFLAGS) -c trilinterp.cctrilinterp.MINPT.o : trilinterp.cc trilinterp.h constants.h	$(CC) $(CFLAGS) -DMINPT -c trilinterp.cc -o trilinterp.MINPT.ousage.o : usage.cc usage.h constants.h	$(CC) $(CFLAGS) -c usage.ccwarn_bad_file.o : warn_bad_file.cc warn_bad_file.h constants.h	$(CC) $(CFLAGS) -c warn_bad_file.ccweedbonds.o : weedbonds.cc weedbonds.h constants.h	$(CC) $(CFLAGS) -c weedbonds.cceintcal.sqrt.o : eintcal.cc eintcal.h constants.h	$(CC) $(CFLAGS) -c -DBOUNDED eintcal.cc -o eintcal.sqrt.oeintcalPrint.sqrt.o : eintcal.cc eintcal.h constants.h	$(CC) $(CFLAGS) -c -DBOUNDED -DEINTCALPRINT eintcal.cc -o eintcalPrint.sqrt.ointnbtable.sqrt.o : intnbtable.cc intnbtable.h constants.h	$(CC) $(OLIMIT) -c intnbtable.cc -o intnbtable.sqrt.onbe.sqrt.o : nbe.cc nbe.h constants.h	$(CC) $(CFLAGS) -c nbe.cc -o nbe.sqrt.o## lcheck dependencies...#analysis.ln : analysis.cc	$(LINT) $(LINTFLAGS) $?banner.ln : banner.cc	$(LINT) $(LINTFLAGS) $?bestpdb.ln : bestpdb.cc	$(LINT) $(LINTFLAGS) $?changeState.ln : changeState.cc	$(LINT) $(LINTFLAGS) $?check_header_float.ln : check_header_float.cc	$(LINT) $(LINTFLAGS) $?check_header_int.ln : check_header_int.cc	$(LINT) $(LINTFLAGS) $?check_header_line.ln : check_header_line.cc	$(LINT) $(LINTFLAGS) $?cluster_analysis.ln : cluster_analysis.cc	$(LINT) $(LINTFLAGS) $?clmode.ln : clmode.cc	$(LINT) $(LINTFLAGS) $?cmdmode.ln : cmdmode.cc	$(LINT) $(LINTFLAGS) $?cnv_state_to_coords.ln : cnv_state_to_coords.cc	$(LINT) $(LINTFLAGS) $?stateLibrary.ln : stateLibrary.cc	$(CC) $(CFLAGS) -c $?readfield.ln : readfield.cc	$(LINT) $(LINTFLAGS) $?readmap.ln : readmap.cc	$(LINT) $(LINTFLAGS) $?readPDBQ.ln : readPDBQ.cc	$(LINT) $(LINTFLAGS) $?dpftypes.ln : dpftypes.cc	$(LINT) $(LINTFLAGS) $?evaluate_energy.ln : evaluate_energy.cc	$(LINT) $(LINTFLAGS) $?getrms.ln : getrms.cc	$(LINT) $(LINTFLAGS) $?get_atom_type.ln : get_atom_type.cc	$(LINT) $(LINTFLAGS) $?getInitialState.ln : getInitialState.cc	$(LINT) $(LINTFLAGS) $?getpdbcrds.ln : getpdbcrds.cc	$(LINT) $(LINTFLAGS) $?initautodock.ln : initautodock.cc	$(LINT) $(LINTFLAGS) $?input_state.ln : input_state.cc	$(LINT) $(LINTFLAGS) $?investigate.ln : investigate.cc	$(LINT) $(LINTFLAGS) $?main.ln : main.cc	$(LINT) $(LINTFLAGS) $?mkNewState.ln : mkNewState.cc	$(LINT) $(LINTFLAGS) $?mkTorTree.ln : mkTorTree.cc	$(LINT) $(LINTFLAGS) $?mkRandomState.ln : mkRandomState.cc	$(LINT) $(LINTFLAGS) $?nonbonds.ln : nonbonds.cc	$(LINT) $(LINTFLAGS) $?openfile.ln : openfile.cc	$(LINT) $(LINTFLAGS) $?output_state.ln : output_state.cc	$(LINT) $(LINTFLAGS) $?parse_com_line.ln : parse_com_line.cc	$(LINT) $(LINTFLAGS) $?parse_dpf_line.ln : parse_dpf_line.cc	$(LINT) $(LINTFLAGS) $?parse_pdbq_line.ln : parse_pdbq_line.cc	$(LINT) $(LINTFLAGS) $?parse_trj_line.ln : parse_trj_line.cc	$(LINT) $(LINTFLAGS) $?print_2x.ln : print_2x.cc	$(LINT) $(LINTFLAGS) $?print_atomic_energies.ln : print_atomic_energies.cc	$(LINT) $(LINTFLAGS) $?print_avsfld.ln : print_avsfld.cc	$(LINT) $(LINTFLAGS) $?writeMolAsPDBQ.ln : writePDBQ.cc	$(LINT) $(LINTFLAGS) -DWRITEMOLASPDBQFUNC $?writePDBQ.ln : writePDBQ.cc	$(LINT) $(LINTFLAGS) $?writePDBQState.ln : writePDBQ.cc	$(LINT) $(LINTFLAGS) -DWRITEPDBQSTATE $?print_rem.ln : print_rem.cc	$(LINT) $(LINTFLAGS) $?printdate.ln : printdate.cc	$(LINT) $(LINTFLAGS) $?printEnergies.ln : printEnergies.cc	$(LINT) $(LINTFLAGS) $?printhms.ln : printhms.cc	$(LINT) $(LINTFLAGS) $?prClusterHist.ln : prClusterHist.cc	$(LINT) $(LINTFLAGS) $?prInitialState.ln : prInitialState.cc	$(LINT) $(LINTFLAGS) $?prTorConList.ln : prTorConList.cc	$(LINT) $(LINTFLAGS) $?qmultiply.ln : qmultiply.cc	$(LINT) $(LINTFLAGS) $?qtransform.ln : qtransform.cc	$(LINT) $(LINTFLAGS) $?quicksort.ln : quicksort.cc	$(LINT) $(LINTFLAGS) $?set_cmd_io_std.ln : set_cmd_io_std.cc	$(LINT) $(LINTFLAGS) $?setflags.ln : setflags.cc	$(LINT) $(LINTFLAGS) $?simanneal.ln : simanneal.cc	$(LINT) $(LINTFLAGS) $?sort_enrg.ln : sort_enrg.cc	$(LINT) $(LINTFLAGS) $?stop.ln : stop.cc	$(LINT) $(LINTFLAGS) $?strindex.ln : strindex.cc	$(LINT) $(LINTFLAGS) $?success.ln : success.cc	$(LINT) $(LINTFLAGS) $?summarizegrids.ln : summarizegrids.cc	$(LINT) $(LINTFLAGS) $?swap.ln : swap.cc	$(LINT) $(LINTFLAGS) $?timesys.ln : timesys.cc	$(LINT) $(LINTFLAGS) $?timesyshms.ln : timesyshms.cc	$(LINT) $(LINTFLAGS) $?torNorVec.ln : torNorVec.cc	$(LINT) $(LINTFLAGS) $?torsion.ln : torsion.cc	$(LINT) $(LINTFLAGS) $?trilinterp.ln : trilinterp.cc	$(LINT) $(LINTFLAGS) $?usage.ln : usage.cc	$(LINT) $(LINTFLAGS) $?weedbonds.ln : weedbonds.cc	$(LINT) $(LINTFLAGS) $?warn_bad_file.ln : warn_bad_file.cc	$(LINT) $(LINTFLAGS) $?## NOSQRT conditionals activated:#eintcal.ln : eintcal.cc	$(LINT) $(LINTFLAGS) -DNOSQRT $?eintcalPrint.ln : eintcal.cc	$(LINT) $(LINTFLAGS) -DNOSQRT -DEINTCALPRINT $?intnbtable.ln : intnbtable.cc	$(LINT) $(LINTFLAGS) -DNOSQRT $?nbe.ln : nbe.cc	$(LINT) $(LINTFLAGS) -DNOSQRT $?## NOSQRT conditionals NOT activated:#eintcal.sqrt.ln : eintcal.cc	$(LINT) $(LINTFLAGS) $?eintcalPrint.sqrt.ln : eintcal.cc	$(LINT) $(LINTFLAGS) -DEINTCALPRINT $?intnbtable.sqrt.ln : intnbtable.cc	$(LINT) $(LINTFLAGS) $?nbe.sqrt.ln : nbe.cc	$(LINT) $(LINTFLAGS) $?## Clean up...#clean :	/bin/rm -f *.o *.s *.ln a.out mon.out autodock3 autodock3sqrt autodock3minpt dualmap libad.acleanlcheck :	/bin/rm -f *.ln## Compaq/DEC Alpha#openalpha :	/bin/cp -p obj.alpha/*.o .openlintalpha :	/bin/cp -p obj.alpha/*.ln .#closealpha :	/bin/cp -p *.o obj.alpha	/bin/rm -f *.ocloselintalpha :	/bin/cp -p *.ln obj.alpha	/bin/rm -f *.ln## Hewlett-Packard Precision Architecture#openhppa :	/bin/cp -p obj.hppa/*.o .openlinthppa :	/bin/cp -p obj.hppa/*.ln .#closehppa :	/bin/cp -p *.o obj.hppa	/bin/rm -f *.ocloselinthppa :	/bin/cp -p *.ln obj.hppa	/bin/rm -f *.ln## SGI/sgi4D/Silicon Graphics#opensgi4D :	/bin/cp -p obj.sgi4D/*.o .openlintsgi4D :	/bin/cp -p obj.sgi4D/*.ln .#closesgi4D :	/bin/cp -p *.o obj.sgi4D	/bin/rm -f *.ocloselintsgi4D :	/bin/cp -p *.ln obj.sgi4D	/bin/rm -f *.ln## Convex#openc2 :	/bin/cp -p obj.c2/*.o .openlintc2 :	/bin/cp -p obj.c2/*.ln .#closec2 :	/bin/cp -p *.o obj.c2	/bin/rm -f *.ocloselintc2 :	/bin/cp -p *.ln obj.c2	/bin/rm -f *.ln## Sun#opensun4 :	/bin/cp -p obj.sun4/*.o .openlintsun4 :	/bin/cp -p obj.sun4/*.ln .#closesun4 :	/bin/cp -p *.o obj.sun4	/bin/rm -f *.ocloselintsun4 :	/bin/cp -p *.ln obj.sun4	/bin/rm -f *.ln## EOF#