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<?xml version="1.0" encoding="iso-8859-1"?><!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "DTD/xhtml1-transitional.dtd"><html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en"><head> <title>netconv.network.Network</title> <link rel="stylesheet" href="epydoc.css" type="text/css"></link></head><body bgcolor="white" text="black" link="blue" vlink="#204080" alink="#204080"><!-- =========== START OF NAVBAR =========== --><table class="navbar" border="0" width="100%" cellpadding="0" bgcolor="#a0c0ff" cellspacing="0"> <tr valign="center"> <th class="navbar"> <a class="navbar" href="netconv-module.html">Home</a> </th> <th class="navbar"> <a class="navbar" href="trees.html">Trees</a> </th> <th class="navbar"> <a class="navbar" href="indices.html">Index</a> </th> <th class="navbar"> <a class="navbar" href="help.html">Help</a> </th> <th class="navbar" width="100%"></th> </tr></table><table width="100%" cellpadding="0" cellspacing="0"> <tr valign="top"> <td width="100%"> <font size="-1"><b class="breadcrumbs"> <a href="netconv-module.html">Package netconv</a> :: <a href="netconv.network-module.html">Module network</a> :: Class Network </b></font></br> </td> <td><table cellpadding="0" cellspacing="0"> <tr><td align="right"><font size="-2">[show private | <a href="../public/netconv.network.Network-class.html">hide private</a>]</font></td></tr> <tr><td align="right"><font size="-2">[<a href="frames.html"target="_top">frames</a> | <a href="netconv.network.Network-class.html" target="_top">no frames</a>]</font></td></tr> </table></td></tr></table><!-- =========== START OF CLASS DESCRIPTION =========== --><h2 class="class">Class Network</h2><hr/><p>Stores information of network</p>Methods for importing/exporting network are provided<hr/><!-- =========== START OF METHOD SUMMARY =========== --><table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"><tr bgcolor="#70b0f0" class="summary"> <th colspan="2">Method Summary</th></tr><tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td> <td><code><span class="summary-sig"><a href="netconv.network.Network-class.html#__init__" class="summary-sig-name"><code>__init__</code></a>(<span class=summary-sig-arg>self</span>, <span class=summary-sig-arg>nnodes</span>, <span class=summary-sig-arg>nedges</span>)</span></code></td></tr><tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td> <td><code><span class="summary-sig"><a href="netconv.network.Network-class.html#attributes2Cluster" class="summary-sig-name"><code>attributes2Cluster</code></a>(<span class=summary-sig-arg>self</span>, <span class=summary-sig-arg>attr</span>)</span></code><br />Converts attributes to cluster</td></tr><tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td> <td><code><span class="summary-sig"><a href="netconv.network.Network-class.html#cluster2Attributes" class="summary-sig-name"><code>cluster2Attributes</code></a>(<span class=summary-sig-arg>self</span>, <span class=summary-sig-arg>attr</span>, <span class=summary-sig-arg>s</span>)</span></code><br />Converts cluster info to attributes</td></tr><tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td> <td><code><span class="summary-sig"><a href="netconv.network.Network-class.html#findId" class="summary-sig-name"><code>findId</code></a>(<span class=summary-sig-arg>self</span>, <span class=summary-sig-arg>id</span>)</span></code><br />Finds node by Id</td></tr><tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td> <td><code><span class="summary-sig"><a href="netconv.network.Network-class.html#findNode" class="summary-sig-name"><code>findNode</code></a>(<span class=summary-sig-arg>self</span>, <span class=summary-sig-arg>node</span>)</span></code><br />Finds node by name</td></tr><tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td> <td><code><span class="summary-sig"><a href="netconv.network.Network-class.html#fromList" class="summary-sig-name"><code>fromList</code></a>(<span class=summary-sig-arg>self</span>, <span class=summary-sig-arg>list</span>, <span class=summary-sig-arg>nodesList</span>)</span></code><br />reads the network from a list of interactions.</td></tr><tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td> <td><code><span class="summary-sig"><a href="netconv.network.Network-class.html#getAllNodes" class="summary-sig-name"><code>getAllNodes</code></a>(<span class=summary-sig-arg>self</span>)</span></code><br />Returns a list with all nodes names.</td></tr><tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td> <td><code><span class="summary-sig"><a href="netconv.network.Network-class.html#getAttribute" class="summary-sig-name"><code>getAttribute</code></a>(<span class=summary-sig-arg>self</span>, <span class=summary-sig-arg>attr</span>, <span class=summary-sig-arg>attribs</span>)</span></code><br />Return generic attribute for the network</td></tr><tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td> <td><code><span class="summary-sig"><a href="netconv.network.Network-class.html#pajek2pos" class="summary-sig-name"><code>pajek2pos</code></a>(<span class=summary-sig-arg>self</span>, <span class=summary-sig-arg>mult</span>)</span></code><br />Converts pajek node positions (range from 0 to 1) to graph position</td></tr><tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td> <td><code><span class="summary-sig"><a href="netconv.network.Network-class.html#pos2pajek" class="summary-sig-name"><code>pos2pajek</code></a>(<span class=summary-sig-arg>self</span>)</span></code><br />Converts node positions to pajek format (range from 0 to 1)</td></tr><tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td> <td><code><span class="summary-sig"><a href="netconv.network.Network-class.html#reset" class="summary-sig-name"><code>reset</code></a>(<span class=summary-sig-arg>self</span>)</span></code><br />Cleans the network</td></tr><tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td> <td><code><span class="summary-sig"><a href="netconv.network.Network-class.html#setAttribute" class="summary-sig-name"><code>setAttribute</code></a>(<span class=summary-sig-arg>self</span>, <span class=summary-sig-arg>attr</span>, <span class=summary-sig-arg>value</span>, <span class=summary-sig-arg>attribs</span>)</span></code><br />Defines generic attribute for the network</td></tr><tr><td align="right" valign="top" width="15%"><font size="-1"> </font></td> <td><code><span class="summary-sig"><a href="netconv.network.Network-class.html#toList" class="summary-sig-name"><code>toList</code></a>(<span class=summary-sig-arg>self</span>)</span></code><br />Converts the network to a list of interactions.</td></tr></table><br /><!-- =========== START OF INSTANCE VARIABLE SUMMARY =========== --><table class="summary" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"><tr bgcolor="#70b0f0" class="summary"> <th colspan="2">Instance Variable Summary</th></tr><tr><td align="right" valign="top" width="15%"><font size="-1"><code>str</code></font></td><td><b><a href="netconv.network.Network-class.html#coordsModel"><code>coordsModel</code></a></b>: set the model used to store network coords</td></tr></table><br /><!-- =========== START OF METHOD DETAILS =========== --><table class="details" border="1" cellpadding="3" cellspacing="0" width="100%" bgcolor="white"><tr bgcolor="#70b0f0" class="details"> <th colspan="2">Method Details</th></tr></table><a name="__init__"></a><table width="100%" class="func-details" bgcolor="#e0e0e0"><tr><td> <h3><span class="sig"><span class="sig-name">__init__</span>(<span class=sig-arg>self</span>, <span class=sig-arg>nnodes</span>=<span class=sig-default>0</span>, <span class=sig-arg>nedges</span>=<span class=sig-default>0</span>)</span> <br /><i>(Constructor)</i> </h3> <dl><dt></dt><dd> <dl><dt><b>Parameters:</b></dt> <dd><code><b>nnodes</b></code> - number of nodes <dd><code><b>nedges</b></code> - number of edges </dd> </dl> </dd></dl></td></tr></table><a name="attributes2Cluster"></a><table width="100%" class="func-details" bgcolor="#e0e0e0"><tr><td> <h3><span class="sig"><span class="sig-name">attributes2Cluster</span>(<span class=sig-arg>self</span>, <span class=sig-arg>attr</span>=<span class=sig-default>('cluster', 'cluster')</span>)</span> </h3> Converts attributes to cluster <dl><dt></dt><dd> <dl><dt><b>Parameters:</b></dt> <dd><code><b>attr</b></code> - attribute to convert from (defaults to 'Cluster') </dd> </dl> </dd></dl></td></tr></table><a name="cluster2Attributes"></a><table width="100%" class="func-details" bgcolor="#e0e0e0"><tr><td> <h3><span class="sig"><span class="sig-name">cluster2Attributes</span>(<span class=sig-arg>self</span>, <span class=sig-arg>attr</span>=<span class=sig-default>('cluster', 'cluster')</span>, <span class=sig-arg>s</span>=<span class=sig-default>''</span>)</span> </h3> Converts cluster info to attributes <dl><dt></dt><dd> <dl><dt><b>Parameters:</b></dt> <dd><code><b>attr</b></code> - attribute that will receive the information (defaults to 'Cluster') <dd><code><b>s</b></code> - string to add at the begining of the value of attribute to avoids problems with "numerical" nodes with the VisualMapper from Cytoscape </dd> </dl> </dd></dl></td></tr></table><a name="findId"></a><table width="100%" class="func-details" bgcolor="#e0e0e0"><tr><td> <h3><span class="sig"><span class="sig-name">findId</span>(<span class=sig-arg>self</span>, <span class=sig-arg>id</span>)</span> </h3> Finds node by Id <dl><dt></dt><dd> <dl><dt><b>Parameters:</b></dt> <dd><code><b>id</b></code> - Id of node </dd> </dl> <dl><dt><b>Returns:</b></dt> <dd>?? 快捷鍵說明
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