Standard (Mandatory) qualifiers:  [-infile]            infile     ABI sequencing trace file  [-outseq]            seqout     [<sequence>.<format>] Nucleotide sequence                                  filename and optional format (output USA)   -graph              xygraph    [$EMBOSS_GRAPHICS value, or x11] Graph type                                  (ps, hpgl, hp7470, hp7580, meta, cps, x11,                                  tekt, tek, none, data, xterm, png)   Additional (Optional) qualifiers:   -startbase          integer    [0] First base to report or display (Integer                                  0 or more)   -endbase            integer    [0] Last sequence base to report or display.                                  If the default is set to zero then the                                  value of this is taken as the maximum number                                  of bases. (Any integer value)   -yticks             boolean    [N] Display y-axis ticks   -[no]sequence       boolean    [Y] Display the sequence on the graph   -window             integer    [40] Sequence display window size (Any                                  integer value)   -bases              string     [GATC] Base graphs to be displayed (Any                                  string is accepted, matching regular                                  expression /[GATC]+/)   Advanced (Unprompted) qualifiers:   -separate           boolean    [N] Separate the trace graphs for the 4                                  bases   Associated qualifiers:   "-outseq" associated qualifiers   -osformat2          string     Output seq format   -osextension2       string     File name extension   -osname2            string     Base file name   -osdirectory2       string     Output directory   -osdbname2          string     Database name to add   -ossingle2          boolean    Separate file for each entry   -oufo2              string     UFO features   -offormat2          string     Features format   -ofname2            string     Features file name   -ofdirectory2       string     Output directory   "-graph" associated qualifiers   -gprompt            boolean    Graph prompting   -gdesc              string     Graph description   -gtitle             string     Graph title   -gsubtitle          string     Graph subtitle   -gxtitle            string     Graph x axis title   -gytitle            string     Graph y axis title   -goutfile           string     Output file for non interactive displays   -gdirectory         string     Output directory   General qualifiers:   -auto               boolean    Turn off prompts   -stdout             boolean    Write standard output   -filter             boolean    Read standard input, write standard output   -options            boolean    Prompt for standard and additional values   -debug              boolean    Write debug output to program.dbg   -verbose            boolean    Report some/full command line options   -help               boolean    Report command line options. More                                  information on associated and general                                  qualifiers can be found with -help -verbose   -warning            boolean    Report warnings   -error              boolean    Report errors   -fatal              boolean    Report fatal errors   -die                boolean    Report dying program messages