?? star.h
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/* * $Id: star.h 1339 2006-09-21 19:46:28Z tbailey $ * * $Log$ * Revision 1.1 2005/07/29 19:11:34 nadya * Initial revision * */#ifndef STAR_H#define STAR_H/* range of scores in pairwise score matrix */#define PAIR_RANGE 100extern void init_star_distr( THETA logodds, /* pairwise score table (logodds) */ int N, /* maximum sites in star alignments */ int alen, /* length of alphabet */ double *back /* letter distribution; include p(X)=0*/);extern THETA init_pairwise_matrix( MAP_TYPE map_type, /* type of mapping */ double map_scale, /* scale of mapping */ int alength, /* length of alphabet */ double *back /* background frequencies */);extern double get_star_logpv( double score, /* star alignment score */ double wN /* weighted number of sites in algnmt.*/);#endif
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