/*  Constants.h    Header file for the Constants    Copyright (c) 2005, 2006              by Hyuk Cho    Copyright (c) 2003, 2004    	      by Hyuk Cho, Yuqiang Guan, and Suvrit Sra                {hyukcho, yguan, suvrit}@cs.utexas.edu*/#if !defined(_CONSTANTS_H_)#define _CONSTANTS_H_#define VERSION_NUMBER				"1.1"#define EXEC_PROGRAM                            "cocluster"#define FLOAT_PRECISION         		1.19209290e-07#define MY_INT_MAX 				32767#define MY_INT_MIN				-32767#define MY_LONG_MAX				2147483647#define MY_LONG_MIN				-2147483647#define	MY_FLT_DIG				6			/* digits of precision of a "float" */#define	MY_FLT_MAX				3.402823466E+38F  	/* max decimal value of a "float" */#define	MY_FLT_MIN				1.175494351E-38F  	/* min decimal value of a "float" */#define	MY_DBL_DIG				15			/* digits of precision of a "double" */#define	MY_DBL_MAX				1.7976931348623157E+308	/* max decimal value of a *double" */#define	MY_DBL_MIN				2.2250738585072014E-308	/* min decimal value of a "double" */#define DEFAULT_STRING_LENGTH			1024#define SCALE_SURFIX_LENGTH     		DEFAULT_STRING_LENGTH#define FILENAME_LENGTH      			DEFAULT_STRING_LENGTH#define OFF					0#define ON					1#define ROW_DIMENSION				1	// for kullback-leibler, but not used in the function #define COL_DIMENSION				2	// for kullback-leibler, but not used in the function#define ITCC_CLASS				"Itcc::"#define MSSRICC_CLASS				"MssrIcc::"#define MSSRIICC_CLASS				"MssrIIcc::"#define ROW_CENTROID				"rowCentroid:"#define COL_CENTROID				"colCentroid:"#define COCLUSTER_FILENAME_SUFFIX		"_cocluster"#define DUMP_FILENAME_SUFFIX			"_dump"#define OBJECTIVE_FILENAME_SUFFIX		"_objective"#define STATISTICS_FILENAME_SUFFIX		"_statistics"#define EMPTY_STRING				""#define MY_ALGORITHM				'A'#define MY_NUM_COL_CLUSTER			'C'#define MY_DUMP_LEVEL				'D'#define MY_SHOWING_EACH_CLUSTER			'E'#define MY_HELP					'H'#define MY_INPUT_FILE				'I'#define MY_COMPUTING_ONE_WAY			'J'#define MY_CLASS_FILE				'K'#define MY_SMOOTHING				'M'#define MY_NUM_RUN				'N'#define MY_OUTPUT_FILE				'O'#define MY_NUM_ROW_CLUSTER			'R'#define MY_SEEDING				'S'#define MY_THRESHOLD				'T'#define MY_UPDATE				'U'#define MY_TAKING_REVERSE			'X'// for "-A"#define MSSRCC_I_ALGORITHM			'E'#define MSSRCC_II_ALGORITHM			'R'#define ITCC_ALGORITHM				'I'#define INFORMATION_THEORETIC_CC		0	// myCLA.algorithmType	(DEFAULT)#define MINIMUM_SUM_SQUARE_RESIDUE_I_CC		1	// myCLA.algorithmType#define MINIMUM_SUM_SQUARE_RESIDUE_II_CC	2	// myCLA.algorithmType// for "-D"#define MINIMUM_DUMP_LEVEL			0#define BATCH_UPDATE_DUMP_LEVEL			1#define LOCAL_SEARCH_DUMP_LEVEL			2#define MAXIMUM_DUMP_LEVEL			3#define APPEND_OUT				'A'	// Also used for "-O"#define OUTPUT_OUT				'O'	// Also used for "-O"// for "-I"#define DENSE_INPUT				'D'#define SPARSE_INPUT				'S'#define SEPARATE_INPUT				'S'#define TOGETHER_INPUT				'T'#define TFN_INPUT				'F'#define TXX_INPUT				'X'#define TFN_SCALING				"tfn"#define TXX_SCALING				"txx"	#define SPARSE_MATRIX           		0	// myCLA.inputMatrixType#define DENSE_MATRIX            		1	// myCLA.inputMatrixType (DEFAULT)#define DENSE_MATRIX_TRANS      		2	// myCLA.inputMatrixType (not used)#define DIM_MATRIX_SEPARATE_FORMAT		0	// myCLA.inputFormatType (for DENSE_INPUT) (DEFAULT)#define DIM_MATRIX_TOGETHER_FORMAT		1	// myCLA.inputFormatType (for DENSE_INPUT)#define	TXX_FILE_FORMAT				0	// myCLA.inputFormatType (for SPARSE_INPUT) (DEFAULT)#define TFN_FILE_FORMAT				1	// myCLA.inputFormatType (for SPARSE_INPUT)// for "-K"#define BOTH_LABEL				'B'#define COL_LABEL				'C'#define ROW_LABEL				'R'#define LABEL_FROM_0				'0'#define LABEL_FROM_1				'1'#define START_FROM_0				0	// myCLA.classOffsetType, myCLA.outputOffsetType#define START_FROM_1				1	// myCLA.classOffsetType, myCLA.outputOffsetType (DEFAULT)#define NO_EXTERNAL_VALIDITY			0	// myCLA.externalValidityType (DEFAULT)#define ROW_EXTERNAL_VALIDITY			1	// myCLA.externalValidityType#define COL_EXTERNAL_VALIDITY			2	// myCLA.externalValidityType#define BOTH_EXTERNAL_VALIDITY			3	// myCLA.externalValidityType// for "-M"#define ANNEALING_TYPE				'A'#define MAXIMUM_ENTROPY_TYPE			'H'#define LAPLACE_TYPE				'L'#define MAGNITUDE_TYPE				'M'#define NO_TYPE					'N'#define UNIFORM_TYPE				'U'#define SMOOTHING_FACTOR        		0.0#define ANNEALING_FACTOR			1.0	// (DEFAULT)#define NO_SMOOTHING            		0	// myCLA.smoothingType (DEFAULT)#define UNIFORM_SMOOTHING       		1	// myCLA.smoothingType#define MAXIMUM_ENTROPY_SMOOTHING    		2	// myCLA.smoothingType#define LAPLACE_SMOOTHING       		3	// myCLA.smoothingType#define MAGNITUDE_SMOOTHING			4	// myCLA.smoothingType// for "-O"#define OUTPUT_COCLUSTER_FILE			'C'#define OUTPUT_OBJECTIVE_FILE			'O'#define OUTPUT_STATISTICS_FILE			'S'#define BLOCK_OUT				'B'#define SIMPLE_OUT				'S'#define BLOCK_FORMAT            		0	// myCLA.outLabelType#define SIMPLE_FORMAT           		1	// myCLA.outLabelType (DEFAULT)#define NO_OPEN_MODE				0	// (DEFAULT)#define APPEND_MODE				1	// myCLA.outputAccessMode#define OUTPUT_MODE				2	// myCLA.outputAccessMode (DEFAULT)// for "-S"#define FARTHEST_SEEDING			'F'#define PERTURBATION_SEEDING			'P'#define RANDOM_SEEDING				'R'#define SEEDING_SEEDING				'S'#define PERMUTATION_SEEDING			'M'#define PERTURBATION_MAGNITUDE			0.1#define RANDOM_INIT				0	// myCLA.{row|col}InitializationMethod (DEFAULT)#define RANDOM_PERTURB_INIT 			1	// myCLA.{row|col}InitializationMethod#define FARTHEST_INIT       			2	// myCLA.{row|col}InitializationMethod#define PERTURBATION_INIT			3	// myCLA.{row|col}InitializationMethod#define SEEDING_INIT				4	// myCLA.{row|col}InitializationMethod#define PERMUTATION_INIT			5	// myCLA.{row|col}InitializationMethod#define ONE_INPUT_MODE				3	// myCLA.{row|col}SeedingAccessMode#define BOTH_INPUT_MODE				4	// myCLA.{row|col}SeedingAccessModeconst char initialMethod[][DEFAULT_STRING_LENGTH]   = {"Random",      "Random perturbation",     "Farthest apart",      "Perturbation",     "Seeding file",     "Permutation",      "Seeding file (two-line format)",			// not used     "Seeding file (block format)"			// not used    };// for "-T"#define BATCH_UPDATE_THRESHOLD  		0.001		// (DEFAULT)#define LOCAL_SEARCH_THRESHOLD  		-0.000001	// for both row and col (DEFAULT)#define BATCH_UPDATE_STEP			'B'#define LOCAL_SEARCH_STEP			'L'// for "-U"#define LOCAL_SEARCH_LENGTH			0	// (DEFAULT)#define SINGLE_UPDATE				'0'#define SINGLE_SINGLE_UPDATE			'1'#define MULTIPLE_UPDATE				'2'#define SINGLE_FLIP				'3'#define MULTIPLE_FLIP				'4'#define SELECTION_PROBABILITY			0.5#define MULTIPLE_FACTOR				2.0#define SINGLE_RESPECTIVELY			0	// myCLA.batchUpdateType#define SINGLE_IN_BATCH				1	// myCLA.batchUpdateType#define MULTIPLE_RESPECTIVELY			2	// myCLA.batchUpdateType#define SINGLE_BY_FLIP				3	// myCLA.batchUpdateType#define MULTIPLE_BY_FLIP			4	// myCLA.batchUpdateType#define BOTH_ROW_AND_COL			0	// myCLA.localSearchType (not used)#define COL_ONLY				1	// myCLA.localSearchType (not used)#define ROW_ONLY				2	// myCLA.localSearchType (not used)#define RESUME_LOCAL_SEARCH			-1	// localSearch resumes when empty cluster(s) exist(s)							// In fact, local search is controlled, based on 							//   both rowLocalSearchLength and colLocalSearchLength#define DEFAULT_ROW_LOCAL_SEARCH_LENGTH		20	// used to avoid row empty clusters#define DEFAULT_COL_LOCAL_SEARCH_LENGTH		20	// used to avoid col empty clusters#define DEFAULT_MAX_PINGPONG_ITERATION		50	// used to avoid infinite pingpong iterationstruct commandLineArgument {  int numInvalidCLA;				// used to keep track of # of invalid command-line-arguments  int algorithmType;				// -A    int numColCluster;				// -C  int dumpLevel;				// -D  int dumpAccessMode;				// -D  bool showingEachCluster;			// -E  int inputMatrixType;				// -I  int inputFormatType;				// -I  bool computingOneWayObjective;		// -J  int externalValidityType;			// -K  int classOffsetType;				// -K  int numRowClass;				// used for validateRowCluster() and related with -K  int numColClass;				// used for validateColCluster() and related with -K  int smoothingType;				// -M  double smoothingFactor;			// -M		// not used...	  double rowAnnealingFactor;			// -M  double colAnnealingFactor;			// -M  double rowSmoothingFactor;			// -M  double colSmoothingFactor;			// -M  int numRun;					// -N  int coclusterOffsetType;			// -O  int coclusterLabelType;			// -O  int coclusterAccessMode;			// -O  int objectiveAccessMode;			// -O  int statisticsAccessMode;			// -0  int numRowCluster;				// -R  int rowInitializationMethod;			// -S  int colInitializationMethod;			// -S  int rowSeedingOffsetType;			// -S  int colSeedingOffsetType;			// -S  int numRowSeedingSet;				// -S s b/c/r 0/1  int numColSeedingSet;				// -S s b/c/r 0/1  int rowSeedingAccessMode;			// -S s b/c/r 0/1  int colSeedingAccessMode;			// -S s b/c/r 0/1  int numRowPermutation;			// -S m  int numColPermutation;			// -S m  double perturbationMagnitude;			// -S  double rowBatchUpdateThreshold;		// -T b  double colBatchUpdateThreshold;		// -T b  double rowLocalSearchThreshold;		// -T l  double colLocalSearchThreshold;		// -T l  int batchUpdateType;				// -U b  int localSearchType;				// -U l		// not used...  int rowLocalSearchLength;			// -U l   int colLocalSearchLength;			// -U l   bool takingReverse;				// -X  int numEmptyRow;				// not used...  int numEmptyCol;				// to keep # of empty column(s) in input matrix  int *emptyRowId;				// not used...  int *emptyColId;				// only needed for checking empty column(s) in VSM in CCS   int *rowClassLabel;				// to keep row class label  int *colClassLabel;				// to keep column class label  bool havingArgument; 				// Is input matrix specified or not?    char dumpFilename[FILENAME_LENGTH];		// -D  char inputFilename[FILENAME_LENGTH];		// -I  char bothClassFilename[FILENAME_LENGTH];	// -K  char rowClassFilename[FILENAME_LENGTH];	// -K  char colClassFilename[FILENAME_LENGTH];	// -K  char coclusterFilename[FILENAME_LENGTH];	// -O  char statisticsFilename[FILENAME_LENGTH];	// -0  char objectiveFilename[FILENAME_LENGTH];	// -0  char bothSeedingFilename[FILENAME_LENGTH];	// -S		// not used...  char rowSeedingFilename[FILENAME_LENGTH];	// -S  char colSeedingFilename[FILENAME_LENGTH];	// -S  char scalingType[SCALE_SURFIX_LENGTH];	// for input matrix in CCS, but not used here                                                // inputFormatType handles this.};  #define DEFAULT_algorithmType			MINIMUM_SUM_SQUARE_RESIDUE_I_CC#define DEFAULT_numColCluster			1#define DEFAULT_dumpLevel			MINIMUM_DUMP_LEVEL#define DEFAULT_dumpAccessMode			NO_OPEN_MODE#define DEFAULT_showingEachCluster		false#define DEFAULT_inputMatrixType			DENSE_MATRIX#define DEFAULT_inputFormatType			DIM_MATRIX_SEPARATE_FORMAT#define DEFAULT_computingOneWayObjective	false#define DEFAULT_externalValidityType		NO_EXTERNAL_VALIDITY#define DEFAULT_classOffsetType			START_FROM_1#define DEFAULT_numRowClass			0#define DEFAULT_numColClass			0#define DEFAULT_smoothingType			NO_SMOOTHING#define DEFAULT_rowAnnealingFactor		ANNEALING_FACTOR#define DEFAULT_colAnnealingFactor		ANNEALING_FACTOR#define DEFAULT_rowSmoothingFactor		SMOOTHING_FACTOR#define DEFAULT_colSmoothingFactor		SMOOTHING_FACTOR#define DEFAULT_numRun				1#define DEFAULT_coclusterOffsetType		START_FROM_1#define DEFAULT_coclusterLabelType		SIMPLE_FORMAT#define DEFAULT_coclusterAccessMode		NO_OPEN_MODE#define DEFAULT_objectiveAccessMode		NO_OPEN_MODE#define DEFAULT_statisticsAccessMode		NO_OPEN_MODE#define DEFAULT_numRowCluster			1#define DEFAULT_rowInitializationMethod		RANDOM_INIT#define DEFAULT_colInitializationMethod		RANDOM_INIT#define DEFAULT_rowSeedingOffsetType		START_FROM_1#define DEFAULT_colSeedingOffsetType		START_FROM_1#define DEFAULT_numRowSeedingSet		1			// for -S s b/c/r 0/1#define DEFAULT_numColSeedingSet		1			// for -S s b/c/r 0/1#define DEFAULT_rowSeedingAccessMode		NO_OPEN_MODE#define DEFAULT_colSeedingAccessMode		NO_OPEN_MODE#define DEFAULT_perturbationMagnitude		PERTURBATION_MAGNITUDE#define DEFAULT_numRowPermutation		1			// for -S m#define DEFAULT_numColPermutation		1			// for -S m#define DEFAULT_rowBatchUpdateThreshold		BATCH_UPDATE_THRESHOLD#define DEFAULT_colBatchUpdateThreshold		BATCH_UPDATE_THRESHOLD#define DEFAULT_rowLocalSearchThreshold		LOCAL_SEARCH_THRESHOLD#define DEFAULT_colLocalSearchThreshold		LOCAL_SEARCH_THRESHOLD#define DEFAULT_batchUpdateType			SINGLE_RESPECTIVELY#define DEFAULT_localSearchType			BOTH_ROW_AND_COL	// not used#define DEFAULT_rowLocalSearchLength		0#define DEFAULT_colLocalSearchLength		0			#define DEFAULT_takingReverse			false#define DEFAULT_havingArgument			false#endif // !defined(_CONSTANTS_H_)