This the implementation of structural SVM for training complex alignment models for protein sequence alignment, especially for homology modeling. The structural SVM algorithm can incorporate many relevant features like secondary structure, relative exposed surface area, profiles and their various interaction into the alignment model. It was developed under Linux and compiles under gcc, built upon the svm^light software by Thorsten Joachims.
you can use Hutch s INCLUDE and LIB files to assemble the program with the exception of the Windows.inc.
If you use the EWCalc.mak file you will have to change the pointers to the proper directories.
